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Package: camtrapDensity 0.1.16

Marcus Rowcliffe

camtrapDensity: Density Estimation Functions for camtrapDP Data

Currently provides functions for working with camtrapDP format data exported from Agouti - checking deployment calibration diagnostic plots, filtering deployments, correcting mis-specified date-time data at specific deployments, running REM density analysis.

Authors:Marcus Rowcliffe

camtrapDensity_0.1.16.tar.gz
camtrapDensity_0.1.16.zip(r-4.7)camtrapDensity_0.1.16.zip(r-4.6)camtrapDensity_0.1.16.zip(r-4.5)
camtrapDensity_0.1.16.tgz(r-4.6-any)camtrapDensity_0.1.16.tgz(r-4.5-any)
camtrapDensity_0.1.16.tar.gz(r-4.7-any)camtrapDensity_0.1.16.tar.gz(r-4.6-any)
camtrapDensity_0.1.16.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
camtrapDensity/json (API)

# Install 'camtrapDensity' in R:

install.packages('camtrapDensity', repos = c('https://camera-traps.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/marcusrowcliffe/camtrapdensity/issues

Datasets:

pkg - Data and metadata from an example study exported from the Agouti camera trap data management platform in camtrap-DP format. Metadata includes study name, authors, location and other details. Data is held in element 'data', itself a list holding dataframes 'deployments', 'media' and 'observations'. See <https://tdwg.github.io/camtrap-dp> for details.

On CRAN:

3.02 score 7 stars 4 scripts 26 exports 136 dependencies

Last updated from:36b6043cf4. Checks:7 WARNING, 2 OK. Indexed: no.

Target	Result	Time
linux-devel-x86_64	WARNING	189
source / vignettes	OK	207
linux-release-x86_64	WARNING	171
macos-release-arm64	WARNING	108
macos-oldrel-arm64	WARNING	93
windows-devel	WARNING	103
windows-release	WARNING	88
windows-oldrel	WARNING	99
wasm-release	OK	217

Exports:check_deployment_models convert_units correct_time downversion_camtrapDP fit_actmodel fit_detmodel fit_speedmodel get_agouti_url get_multiplier get_parameter_table get_trap_rate get_traprate_data lnorm_confint map_deployments map_traprates merge_camtrapDP plot_deployment_schedule read_camtrap_dp_csv read_camtrapDP recalc_events rem rem_estimate select_species slice_camtrap_dp subset_deployments write_rem_csv

Dependencies:activity askpass assertthat base64enc bbmle bdsmatrix bit bit64 bslib cachem camtraptor class classInt cli clipr codetools cpp11 crayon crosstalk curl data.table DBI digest Distance dplyr e1071 EML emld evaluate farver fastmap fontawesome frictionless fs future future.apply generics ggplot2 globals glue gtable gtools highr hms htmltools htmlwidgets httr isoband jpeg jqr jquerylib jsonld jsonlite KernSmooth knitr labeling later lattice lazyeval leaflet leaflet.providers lifecycle listenv lubridate magrittr MASS Matrix memoise mgcv mime mrds mvtnorm nlme nloptr numDeriv openssl optimx otel overlap parallelly pbapply pillar pkgconfig plotly plyr png pracma prettyunits progress promises proxy purrr R6 rappdirs raster rbibutils RColorBrewer Rcpp RcppArmadillo Rdpack readr reshape2 rlang rmarkdown Rsolnp s2 S7 sass sbd scales sf sp stringi stringr suntools sys terra tibble tidyr tidyselect timechange tinytex truncnorm tzdb units utf8 uuid V8 vctrs viridisLite vroom withr wk xfun xml2 yaml

Help page	Topics
Check deployment calibration model diagnostic plots	check_deployment_models
Change the units of an REM parameter table	convert_units
Correct times for a given deployment in a camera trap datapackage	correct_time
Downversion Camtrap DP datapackage	downversion_camtrapDP
Fit an activity model	fit_actmodel
Fit a detection function model	fit_detmodel
Estimate average animal speed	fit_speedmodel
Gets a set Agouti sequences URLs.	get_agouti_url
Get a unit multiplier	get_multiplier
Create a parameter table from a set of models	get_parameter_table
Get average trap rate from REM data	get_trap_rate
Get REM data from a camtrap-dp datapackage	get_traprate_data
Log-normal confidence interval	lnorm_confint
Plot a map of deployments	map_deployments
Plot a map of deployment trap rates	map_traprates
Merge Camtrap DP datapackages	merge_camtrapDP
Data and metadata from an example study exported from the Agouti camera trap data management platform in camtrap-DP format. Metadata includes study name, authors, location and other details. Data is held in element 'data', itself a list holding dataframes 'deployments', 'media' and 'observations'. See <https://tdwg.github.io/camtrap-dp> for details.	pkg
Plot a deployment Gantt chart	plot_deployment_schedule
Create a datapackage from csv files	read_camtrap_dp_csv
Read a Camptrap DP datapackage	read_camtrapDP
Recalculate event observations	recalc_events
Fit a random encounter model	rem
Integrated random encounter model density estimate	rem_estimate
Select a species name	select_species
Take a time slice of a data package	slice_camtrap_dp
Subset a camera trap datapackage deployments	subset_deployments
Write REM results to csv file	write_rem_csv

Package: camtrapDensity 0.1.16

camtrapDensity: Density Estimation Functions for camtrapDP Data

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Help Manual

Usage by other packages (reverse dependencies)