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camtrapR - Camera Trap Data Management and Analysis Framework

Management and analysis of camera trap wildlife data through an integrated workflow. Provides functions for image/video organization and metadata extraction, species/individual identification. Creates detection histories for occupancy and spatial capture-recapture analyses, with support for multi-season studies. Includes tools for fitting community occupancy models in JAGS and NIMBLE, and an interactive dashboard for survey data visualization and analysis. Features visualization of species distributions and activity patterns, plus export capabilities for GIS and reports. Emphasizes automation and reproducibility while maintaining flexibility for different study designs.

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occupancy-modelingspatial-capture-recapturewildlife

9.75 score 45 stars 212 scripts 1.4k downloads

camtrapdp - Read and Manipulate Camera Trap Data Packages

Read and manipulate Camera Trap Data Packages ('Camtrap DP'). 'Camtrap DP' (<https://camtrap-dp.tdwg.org>) is a data exchange format for camera trap data. With 'camtrapdp' you can read, filter and transform data (including to Darwin Core) before further analysis in e.g. 'camtraptor' or 'camtrapR'.

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camtrap-dposcibio

6.91 score 18 stars 2 dependents 23 scripts 677 downloads

camtraptor - Explore and Visualize Camera Trap Data Packages

Explore and visualize Camera Trap Data Packages ('Camtrap DP', <https://camtrap-dp.tdwg.org/>). camtraptor offers a step-by-step workflow to read Camtrap DP files, filter data of interest, summarize information (e.g. number of observed species) and visualize this per deployment on an interactive map. You can also use it to transform data for analysis in 'camtrapR'.

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camera-trapscamtrap-dposcibio

6.68 score 17 stars 29 scripts

R2camtrapdp - Convert Camera Trap Dataset to 'Camtrap DP'

Builds Camera Trap Data Packages ('Camtrap DP') from arbitrary spreadsheets in a schema-driven way: table structure, types, constraints and relations are read from the 'Frictionless' table schemas of the requested 'Camtrap DP' version, so any version and custom columns are handled automatically. Provides validation against the schemas and an optional bridge to the 'frictionless' 'Python' framework. The 'Camtrap DP' standard is described in Bubnicki et al. (2023) <doi:10.1002/rse2.374>.

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5.56 score 2 stars 255 downloads

camtrapReport - Camera-Trap Report Generator

Provides an extensible workflow for processing camera-trap data in the 'Camtrap DP' format and automatically generating reproducible data-status and ecological reports in HTML or PDF format. The package supports data-quality checks, ecological summaries, visualisations, maps, tables and modular report sections for wildlife-monitoring applications. Optional taxonomic enrichment queries the Global Biodiversity Information Facility Species API <https://techdocs.gbif.org/en/openapi/v1/species> through 'taxize'. Browser-based map backgrounds use OpenStreetMap <https://www.openstreetmap.org>, OSM Germany <https://openstreetmap.de/germanstyle/> and OpenTopoMap <https://opentopomap.org>, subject to their usage terms.

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automating-camera-trap-data-reportingcamera-trapsecological-reportingmodular-r-packagereproducible-workflowwildlife-monitoring

5.13 score 9 stars 6 scripts

camtrapDensity - Density Estimation Functions for camtrapDP Data

Currently provides functions for working with camtrapDP format data exported from Agouti - checking deployment calibration diagnostic plots, filtering deployments, correcting mis-specified date-time data at specific deployments, running REM density analysis.

Last updated

3.38 score 8 stars 6 scripts